Publications
============

Christopher Schiefer, Marc Bux, Jörgen Brandt, Clemens Messerschmidt, Knut Reinert, Dieter Beule, Ulf Leser. `Portability of Scientific Workflows in NGS Data Analysis: A Case Study <http://arxiv.org/abs/2006.03104>`_. *arXiv*, 2020.

Jörgen Brandt and Wolfgang Reisig. `Modeling Erlang Processes as Petri Nets <https://dl.acm.org/doi/abs/10.1145/3239332.3242767>`_. *Proceedings of the 17th ACM SIGPLAN International Workshop on Erlang (Erlang 2018)*, 2018.

Jörgen Brandt, Wolfgang Reisig, and Ulf Leser. `Computation Semantics of the Functional Scientific Workflow Language Cuneiform <https://www.cambridge.org/core/journals/journal-of-functional-programming/article/computation-semantics-of-the-functional-scientific-workflow-language-cuneiform/1A3B8AB825939117C5BD9F850F63ADCC>`_. *Journal of Functional Programming*, 2017.

Marc Bux, Jörgen Brandt, Carl Witt, Jim Dowling, and Ulf Leser. `Hi-WAY: Execution of Scientific Workflows on Hadoop YARN <https://openproceedings.org/2017/conf/edbt/paper-248.pdf>`_. *Proceedings of the 20th International Conference on Extending Database Technology (EDBT)*, 2017.

Liam Harold Childs, Soulafa Mamlouk, Jörgen Brandt, Christine Sers, and Ulf Leser. `SoFIA: a data integration framework for annotating high-throughput datasets <https://academic.oup.com/bioinformatics/article/32/17/2590/2450746>`_. *Bioinformatics*, 2016.

Jörgen Brandt, Marc Bux, and Ulf Leser. `Cuneiform: a Functional Language for Large Scale Scientific Data Analysis <http://ceur-ws.org/Vol-1330/paper-03.pdf>`_. *Proceedings of the Workshops of the EDBT/ICDT 2015 Joint Conference*, 2015.

Marc Bux, Jörgen Brandt, Carsten Lipka, Kamal Hakimzadeh, Jim Dowling, and Ulf Leser. `Saasfee: Scalable Scientific Workflow Execution Engine <http://dx.doi.org/10.14778/2824032.2824094>`_. *Proceedings of the VLDB Endowment*, 2015.

Alysson Bessani, Jörgen Brandt, Marc Bux, Vinicius Cogo, Lora Dimitrova, Jim Dowling, Ali Gholami, Kamal Hakimzadeh, Michael Hummel, Mahmoud Ismail, Erwin Laure, Ulf Leser, Jan-Eric Litton, Roxanna Martinez, Salman Niazi, Jane Reichel, and Karin Zimmermann. `Biobankcloud: a Platform for the Secure Storage, Sharing, and Processing of Large Biomedical Data Sets <http://www.di.fc.ul.pt/~bessani/publications/dmah15-bbc.pdf>`_. *The First International Workshop on Data Management and Analytics for Medicine and Healthcare (DMAH 2015)*, 2015.